DeepToA

About DeepToA

DeepToA is an ensemble deep-Learning approach to predicting the "Theater of Activity" in a Microbiome. Metagenomics is the study of microbiomes using DNA sequencing. A microbiome consists of an assemblage of microbes that is associated with a "theater of activity" (ToA). To what degree does the taxonomic and functional content of the former depend on the (details of the) latter? More technically, given a taxonomic and/or functional profile estimated from metagenomic sequencing data, how to predict the associated ToA?
The joint work, is mostly promoted by Wenhuan Zeng (University of Tübingen), Anupam Gautam (University of Tübingen & IMPRS-"From Molecules to Organisms", Max Planck Institute for Biology Tübingen), and Daniel H. Huson (University of Tübingen). We encourage all researcher around the world to contact us and to share your ideas on how to improve or extend our services.

Publication:
1) An Ensemble Deep-Learning Approach to Predicting the Theater of Activity of a Microbiome. Wenhuan Zeng, Anupam Gautam, Daniel H. Huson. (Oxford) Bioinformatics, August 2022 (Link).
2) Preprint can be found here (Link).

Fill the required detail

Please enter your Name, Institute Name and email in the required feild .

Upload data

upload the required data taxonomical profile table and InterPro functional table (optional). For more detail read the manual carefully.

Submit the job

After filling in the required detail and uploading file, please click on the submit job button. A email will be send to you with job detail once it is submit and once it is finshed with result link

Submit Job

Note: please read the manual before submitting the job.
Our file system has been updated. If you encounter any bugs or issues during your job, please feel free to contact us via email (11/Aug/2023).

Select Metagenomic Profile Table:

Select Functional Table:

Choose a case for metagenomic profile table:

Note: These are just small example datasets made for users,
by removing taxa and function for original tables, to show
how tables should be. If you are using example tables,
select a case will be:- MGnify taxa id and formatted taxonomy.

Download example Metagenomic profile table:

Download example Functional Table:

Version History and Warranty

DeepToA v.1.0.2 - July 2022
© Copyright 2022-2023 WSI-ZBIT/IBMI. This web platform and all its services/tools come with ABSOLUTELY NO WARRANTY.
All services (if not restricted) are freely available for ACADEMIC NON-profit institutions, otherwise do not hesitate to contact us by email at deeptoa[at]inf.uni-tuebingen.de.